summer restructuring:

* .h include only the strict minimum for their own parsing
  * this forces all files to include explicitment their needs and not count on far streched dependencies
  * this helps Makefile to rebuild only the minimum
  * according to this rule, most standalone .h are now gone
  * big app.h is gone
  * remove seldom __cplusplus, if c++ happens, everything will have to be done properly anyway
* all unrequired include were removed
* split common/ into common/ (client+arm) and common_arm/ (os+bootloader)
  * bring zlib to common/
  * bring stuff not really/not yet used in common back to armsrc/ or client/
  * bring liblua into client/
  * bring uart into client/
  * move some portions of code around (dbprint, protocols,...)
* rename unused files into *_disabled.[ch] to make it explicit
* rename soft Uarts between 14a, 14b and iclass, so a standalone could use several without clash
* remove PrintAndLogDevice
* move deprecated-hid-flasher from client to tools
* Makefiles
  * treat deps in armsrc/ as in client/
  * client: stop on warning (-Werror), same as for armsrc/

Tested on:

* all standalone modes
* Linux

client/Makefile

@@ -28,7 +28,7 @@ ENV_CFLAGS := $(CFLAGS)
 
 platform = $(shell uname)
 
-VPATH = ../common ../zlib ../uart
+VPATH = ../common ../common/zlib uart
 OBJDIR = obj
 
 LDLIBS =
@@ -44,18 +44,19 @@ ifneq ($(platform),Darwin)
     LDLIBS += -Wl,--as-needed -latomic -Wl,--no-as-needed
 endif
 
-LUALIB = ../liblua/liblua.a
+LUALIBPATH = ./liblua
+LUALIB = $(LUALIBPATH)/liblua.a
 JANSSONLIBPATH = ./jansson
 JANSSONLIB = $(JANSSONLIBPATH)/libjansson.a
 MBEDTLSLIBPATH = ../common/mbedtls
 MBEDTLSLIB = $(MBEDTLSLIBPATH)/libmbedtls.a
 CBORLIBPATH = ./tinycbor
 CBORLIB = $(CBORLIBPATH)/tinycbor.a
-LIBS = -I../zlib -I../uart -I../liblua -I$(MBEDTLSLIBPATH) -I$(JANSSONLIBPATH) -I$(CBORLIBPATH)
+LIBS = -I../common/zlib -Iuart -I$(LUALIBPATH) -I$(MBEDTLSLIBPATH) -I$(JANSSONLIBPATH) -I$(CBORLIBPATH)
 INCLUDES_CLIENT = -I. -I../include -I../common -I/opt/local/include $(LIBS)
 LDFLAGS = $(ENV_LDFLAGS)
 
-CFLAGS = $(ENV_CFLAGS) -std=c99 -D_ISOC99_SOURCE -DPRESETS $(INCLUDES_CLIENT) -Wall -g -O3
+CFLAGS = $(ENV_CFLAGS) -std=c99 -D_ISOC99_SOURCE -DPRESETS $(INCLUDES_CLIENT) -Wall -Werror -g -O3
 ifneq (,$(findstring MINGW,$(platform)))
     CFLAGS += -mno-ms-bitfields
 endif
@@ -117,7 +118,7 @@ endif
 
 # Flags to generate temporary dependency files
 DEPFLAGS = -MT $@ -MMD -MP -MF $(OBJDIR)/$*.Td
-# make temporary to final dependeny files after successful compilation
+# make temporary to final dependency files after successful compilation
 POSTCOMPILE = $(MV) -f $(OBJDIR)/$*.Td $(OBJDIR)/$*.d
 
 CORESRCS =  uart_posix.c \
@@ -237,7 +238,6 @@ CMDSRCS =   crapto1/crapto1.c \
             scripting.c \
             cmdscript.c \
             pm3_bitlib.c \
-            protocols.c \
             cmdcrc.c \
             reveng/preset.c \
             reveng/reveng.c \
@@ -333,7 +333,7 @@ lualibs/mf_default_keys.lua : default_keys.dic
 
 clean:
 	$(Q)$(RM) $(CLEAN)
-	$(Q)$(MAKE) --no-print-directory -C ../liblua clean
+	$(Q)$(MAKE) --no-print-directory -C $(LUALIBPATH) clean
 	$(Q)$(MAKE) --no-print-directory -C $(JANSSONLIBPATH) clean
 	$(Q)$(MAKE) --no-print-directory -C $(MBEDTLSLIBPATH) clean
 	$(Q)$(MAKE) --no-print-directory -C $(CBORLIBPATH) clean
@@ -344,7 +344,7 @@ tarbin: $(BINS)
 
 lua_build:
 	$(info [*] MAKE liblua for $(LUAPLATFORM))
-	$(Q)$(MAKE) --no-print-directory -C ../liblua $(LUAPLATFORM)
+	$(Q)$(MAKE) --no-print-directory -C $(LUALIBPATH) $(LUAPLATFORM)
 
 jansson_build:
 	$(info [*] MAKE jansson)